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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_81005_81083_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81005 - 81083
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTGTCTTAAGA
Flanking Amino Acid:
WGVWEIIKRTGIPTLGKNVV
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.1
0.54
0.9
67.5
38.3
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
67.7
0.55
1.7
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006539
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006815
77267 - 83752
6486