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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_818426_825685_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
818426 - 825685
Intron Length:
7260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGAAATA
5'SS Class:
major
3'SS Sequence:
TTTCCCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CACCTCTCACCG
Flanking Amino Acid:
NFKMEGQIFMDGAEQLCWRT
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
66.8
38.5
Major BPS
72.7
0.56
1
75
30.1
Major PPT
85
0.79
0.7
80.5
24.7
Minor 5ss
35.2
-1.7
3.4
45.1
44.9
Minor BPS
42.8
-0.6
1.8
41.43
43.2

Associated Gene:

Gene:
RASSF2
Ensembl Gene ID:
ENSAPLG00000015822
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016524
815894 - 839036
23143