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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_82793_83612_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82793 - 83612
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAG
5'SS Class:
major
3'SS Sequence:
CCCCATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATGCTAAACT
Flanking Amino Acid:
PRLVGDVDFEGVKKKASYIT
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
66.7
38.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
74.7
0.56
0.8
68.2
31.6
Minor 5ss
38.3
-1.3
2.9
48
47.7
Minor BPS
63
0.49
2.1
84.67
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006539
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006815
77267 - 83752
6486