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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_828974_830068_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
828974 - 830068
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTTTTCTCAGCA
Flanking Amino Acid:
VPCGKDKYISKNELLLHLKT
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.7
36.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
40
-1.1
3.1
51.1
39.8
Minor BPS
57.2
0.22
1.8
71.1
41.3

Associated Gene:

Gene:
RASSF2
Ensembl Gene ID:
ENSAPLG00000015822
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020906
825686 - 840474
14789