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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_838468_838966_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
838468 - 838966
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
TTTGCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
TTTTCCTTTGCC
Flanking Amino Acid:
EDREVKKLMRKYSILRLMIE
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
69.1
41.8
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
85.7
0.8
0.8
77.2
37
Minor 5ss
41.4
-1
2.8
50.6
39.8
Minor BPS
49.2
-0
3.6
82.88
37.2

Associated Gene:

Gene:
RASSF2
Ensembl Gene ID:
ENSAPLG00000015822
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020906
825686 - 840474
14789
ENSAPLT00000016524
815894 - 839036
23143