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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_848996_850656_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
848996 - 850656
Intron Length:
1661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAC
U12 Branch Point Sequence:
CTGCCCCTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
51.2
0.03
0.9
58.7
27.5
Major PPT
77.5
0.62
0.9
70.5
35.2
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
60.4
0.32
1.8
69.66
42.4

Associated Gene:

Gene:
CDS2
Ensembl Gene ID:
ENSAPLG00000016097
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045477
706045 - 850736
144692