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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_865458_865561_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
865458 - 865561
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAACAGT
5'SS Class:
major
3'SS Sequence:
TCTCCCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTCCCTCTACA
Flanking Amino Acid:
KHFRPIRNRLISTGSEETCP
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
68.1
42.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
82.5
0.73
0.7
76.2
26
Minor 5ss
42.9
-0.8
3.1
61.7
43.2
Minor BPS
55.5
0.17
1.9
69.55
42.2

Associated Gene:

Gene:
PROM2
Ensembl Gene ID:
ENSAPLG00000015738
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016407
864739 - 871427
6689