Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_867737_868260_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

867737 - 868260

Intron Length:

524

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTTGCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TTTTTCTTACTG

Flanking Amino Acid:

RNWVNQEIYKFIDTPGNLPP

Intron Amino Acid Position:

508

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

72.2

39.5

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

74.9

0.56

68.5

42.1

Minor 5ss

29.2

-2.4

2.9

36.2

40.8

Minor BPS

68.5

0.44

1.6

74.4

38.6

Associated Gene:

Gene:

PROM2

Ensembl Gene ID:

ENSAPLG00000015738

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016407

864739 - 871427

6689