Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_869080_869189_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

869080 - 869189

Intron Length:

110

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCAAG

5'SS Class:

major

3'SS Sequence:

CTTGGTCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

ACTCCCTTCACC

Flanking Amino Acid:

AVERMAQVIQELREEMTKMS

Intron Amino Acid Position:

362

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

64.9

42.8

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

76.7

0.6

0.9

69.7

36.7

Minor 5ss

32.8

-2

2.8

31.4

42.6

Minor BPS

62.9

0.39

1.8

70.2

41.1

Associated Gene:

Gene:

PROM2

Ensembl Gene ID:

ENSAPLG00000015738

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016407

864739 - 871427

6689