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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_870031_870173_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
870031 - 870173
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
GCCCCCGTACAC
Flanking Amino Acid:
LRQHIANVPQGVQMVVDQFE
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
40.2
-0.7
2.2
45.33
42.9

Associated Gene:

Gene:
PROM2
Ensembl Gene ID:
ENSAPLG00000015738
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016407
864739 - 871427
6689