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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_870802_871022_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
870802 - 871022
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
GTTTCTTTTACA
Flanking Amino Acid:
DLIQQNPLPTELLRAALNDP
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
69.9
0.5
1
73
31.5
Major PPT
89.2
0.88
0.7
83.7
31.3
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
PROM2
Ensembl Gene ID:
ENSAPLG00000015738
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016407
864739 - 871427
6689