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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_874849_875543_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
874849 - 875543
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TCTGTGTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTGTGTCAACA
Flanking Amino Acid:
VFPDKGYSFVRFNSHESAAH
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
71
0.47
1
65.7
39.9
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
46.7
-0.2
2.3
62.43
44.3

Associated Gene:

Gene:
TIA1
Ensembl Gene ID:
ENSAPLG00000009953
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010394
872461 - 887373
14913
ENSAPLT00000045041
872461 - 887373
14913