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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_881155_882494_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
881155 - 882494
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CTTTCCCCAAAA
Flanking Amino Acid:
STVVNTLRSQDHFHVFVGDL
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
63.9
0.31
1
65.1
29.6
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
51.9
0.06
2
70.03
41.7

Associated Gene:

Gene:
TIA1
Ensembl Gene ID:
ENSAPLG00000009953
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010394
872461 - 887373
14913