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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_888133_888220_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
888133 - 888220
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAACGGCG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTTCCTCACA
Flanking Amino Acid:
GGQRGAPGRIAVVGGGIGGT
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.3
52.7
44.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
88.9
0.88
0.6
84.3
23.7
Minor 5ss
35.6
-1.6
3.6
48.2
47.5
Minor BPS
59.6
0.3
2.1
79.54
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026556
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019813
887913 - 888909
997