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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_90067_90273_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90067 - 90273
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CAGGTCCTAACT
Flanking Amino Acid:
TVAAIIFPVMILALILVRRL
Intron Amino Acid Position:
1009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
69.6
41.1
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
73.6
0.53
0.7
65.7
30.2
Minor 5ss
35.5
-1.7
3.4
47.8
42.4
Minor BPS
49.6
0.05
1.8
64.99
45.5

Associated Gene:

Gene:
SLC4A5
Ensembl Gene ID:
ENSAPLG00000007031
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007368
85668 - 113226
27559