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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_90949_91053_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90949 - 91053
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCGCCACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
ATGGCTTCATCC
Flanking Amino Acid:
PGEQPQFLGVREQRVTGIIV
Intron Amino Acid Position:
903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
69.2
0.43
0.9
58.7
37
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
46.6
-0.2
1.9
56.45
42.5

Associated Gene:

Gene:
SLC4A5
Ensembl Gene ID:
ENSAPLG00000007031
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007368
85668 - 113226
27559