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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_92645_93335_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92645 - 93335
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGCCA
5'SS Class:
major
3'SS Sequence:
TCTCTACCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGGAT
U12 Branch Point Sequence:
TCCTCTCTACCC
Flanking Amino Acid:
PKLHIPSIIKPTRVDRGWFV
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
57
41.6
Major BPS
66.4
0.41
1.4
65.3
43.7
Major PPT
75.7
0.58
0.8
69.3
30.2
Minor 5ss
33.5
-1.9
3
40.3
45.4
Minor BPS
49.2
-0
2
62.26
43.8

Associated Gene:

Gene:
SLC4A5
Ensembl Gene ID:
ENSAPLG00000007031
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007368
85668 - 113226
27559