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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_98262_98441_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98262 - 98441
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TGTGTCTCCACA
Flanking Amino Acid:
EIGEELAWTGRFCGGLYLDI
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
75.5
0.57
0.9
69
37.2
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
47.7
-0.1
2.1
63.67
42.8

Associated Gene:

Gene:
SLC4A5
Ensembl Gene ID:
ENSAPLG00000007031
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007368
85668 - 113226
27559