About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_994166_1045874_F

Intron Information:

Intron Rank:
150460
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
994166 - 1045874
Intron Length:
51709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGCA
5'SS Class:
major
3'SS Sequence:
GAAGGGTTCTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTTTCTCAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
68.7
36.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
48
-0.1
1.2
44.8
45.5
Minor 5ss
26.1
-2.7
3
31.3
42.3
Minor BPS
57.9
0.24
1.9
70.77
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030873
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032317
993686 - 1046448
52763