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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_99665_103095_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
99665 - 103095
Intron Length:
3431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTTCCCCAACA
Flanking Amino Acid:
DISDTPSTDQLKNKFIKKIP
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
80.9
31.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
79.1
0.65
0.8
74.7
29
Minor 5ss
38.1
-1.3
3
52.4
44.3
Minor BPS
68.3
0.57
1.9
84.96
34.3

Associated Gene:

Gene:
SLC4A5
Ensembl Gene ID:
ENSAPLG00000007031
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007368
85668 - 113226
27559