About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1060312_1082207_F

Intron Information:

Intron Rank:
142747
Intron Class:
major
Intron Phase:
Intron Coordinates:
1060312 - 1082207
Intron Length:
21896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.5
0.75
0.8
75
39.5
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026959
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037569
1059989 - 1083321
23333