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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_112878_121268_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112878 - 121268
Intron Length:
8391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTCTTTTTATT
Flanking Amino Acid:
ENESEPEEPSGVEGAAFQSR
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.5
0.8
0.7
81.8
28.5
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
55.6
0.26
1.6
73.31
37.6

Associated Gene:

Gene:
KDM1A
Ensembl Gene ID:
ENSAPLG00000011113
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011622
107218 - 162302
55085