Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1162319_1177825_F

Intron Information:

Intron Rank:

148427

Intron Class:

major

Intron Phase:

Intron Coordinates:

1162319 - 1177825

Intron Length:

15507

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

GATCTCGTTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

TTCCCTTTGATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.04

0.8

78.8

38.3

Major BPS

0.85

0.9

39.9

Major PPT

72.2

0.5

61.9

44.1

Minor 5ss

39.6

-1.2

2.8

49.7

46.6

Minor BPS

65.9

0.48

1.2

70.6

35.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029918

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028160

1161859 - 1178840

16982