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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_121403_125541_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
121403 - 125541
Intron Length:
4139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
ATTTGTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTTGTTTAACA
Flanking Amino Acid:
KVFLYIRNRTLQLWLDNPKI
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.3
72.8
38.8
Major BPS
80
0.75
1
78.6
31
Major PPT
78.3
0.64
1
73.8
40
Minor 5ss
38.1
-1.3
3.3
53.7
43.8
Minor BPS
71.8
0.68
1.7
81.43
34

Associated Gene:

Gene:
KDM1A
Ensembl Gene ID:
ENSAPLG00000011113
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011622
107218 - 162302
55085