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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_126561_128685_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126561 - 128685
Intron Length:
2125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
TATGACTTATTT
Flanking Amino Acid:
GIYKRVKPLPTKKTGKVIII
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.8
33.6
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
34.3
-1.8
3.2
43.2
38.3
Minor BPS
54
0.2
1.9
74.03
42.9

Associated Gene:

Gene:
KDM1A
Ensembl Gene ID:
ENSAPLG00000011113
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011622
107218 - 162302
55085