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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_130740_132388_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
130740 - 132388
Intron Length:
1649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AAATGTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
AGTACTCTAACT
Flanking Amino Acid:
DLGAMVVTGLGGNPMAVVSK
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
72.6
0.51
1
62.5
47.4
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
60
0.39
1.7
77.05
38.8

Associated Gene:

Gene:
KDM1A
Ensembl Gene ID:
ENSAPLG00000011113
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011622
107218 - 162302
55085