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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_132484_136446_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
132484 - 136446
Intron Length:
3963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CTTTGACTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TCTTCTTTGACT
Flanking Amino Acid:
CPLYEANGQAVPKEKDEMVE
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.4
64
47.6
Major BPS
78.3
0.7
1
80
32.1
Major PPT
71.2
0.48
0.9
62.7
38.7
Minor 5ss
39.7
-1.2
3
55
42.3
Minor BPS
82.3
1.1
1
90.81
33.2

Associated Gene:

Gene:
KDM1A
Ensembl Gene ID:
ENSAPLG00000011113
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011622
107218 - 162302
55085