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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1344541_1345292_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1344541 - 1345292
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGCAT
U12 Branch Point Sequence:
GGCTCATGCATC
Flanking Amino Acid:
ICTNFCQPKPGYRQSLKLPA
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
54.9
0.12
1.4
67
39.8
Major PPT
75.4
0.57
0.8
73.7
31.4
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
42.4
-0.6
2
49.99
40.3

Associated Gene:

Gene:
EDN2
Ensembl Gene ID:
ENSAPLG00000022389
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037217
1341691 - 1347038
5348