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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_136590_137499_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
136590 - 137499
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTACCTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CACTTTTTACCT
Flanking Amino Acid:
SLGQALEVVIQLQEKHVKDE
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.5
0.66
0.9
73.3
35.6
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
55.3
0.24
1.6
67.59
44

Associated Gene:

Gene:
KDM1A
Ensembl Gene ID:
ENSAPLG00000011113
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011622
107218 - 162302
55085