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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_137591_138589_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
137591 - 138589
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGTTT
5'SS Class:
major
3'SS Sequence:
ACACCTTAAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TACACCTTAAAA
Flanking Amino Acid:
QEELKDLLNKMVNLKEKIKE
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
79.5
36.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
49.4
-0
1.1
49.5
36.7
Minor 5ss
38.1
-1.3
3.4
56
48.2
Minor BPS
67.3
0.54
1.5
71.02
40.5

Associated Gene:

Gene:
KDM1A
Ensembl Gene ID:
ENSAPLG00000011113
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011622
107218 - 162302
55085