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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_148397_156717_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
148397 - 156717
Intron Length:
8321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTCTG
5'SS Class:
major
3'SS Sequence:
CTTCCCTGATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TCTTCCCTGATT
Flanking Amino Acid:
ELFLFWNLYKAPILLALVAG
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.2
63.6
48.1
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
66.3
0.37
0.9
66.6
34.2
Minor 5ss
42
-0.9
3.2
58.1
46.5
Minor BPS
67.7
0.64
1.6
83.81
37.4

Associated Gene:

Gene:
KDM1A
Ensembl Gene ID:
ENSAPLG00000011113
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011622
107218 - 162302
55085