About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_156846_161127_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156846 - 161127
Intron Length:
4282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GTGTCAACAACT
Flanking Amino Acid:
GIFGSSAVPQPKETVVSRWR
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
81.8
31.1
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
81.3
0.7
0.8
79.8
32.2
Minor 5ss
32.4
-2
2.4
35.7
40.3
Minor BPS
48.2
-0
2.1
71.86
44.1

Associated Gene:

Gene:
KDM1A
Ensembl Gene ID:
ENSAPLG00000011113
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011622
107218 - 162302
55085