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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1659356_1663574_R

Intron Information:

Intron Rank:
131026
Intron Class:
major
Intron Phase:
Intron Coordinates:
1659356 - 1663574
Intron Length:
4219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCACATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTTTCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
68.4
0.41
0.9
60.9
33.4
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
50.7
0.1
2.1
80.75
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017699
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038959
1658294 - 1676260
17967