Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1756327_1756495_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1756327 - 1756495

Intron Length:

169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

CCCACCACCCAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACCCAT

U12 Branch Point Sequence:

TTCCTCCCACCA

Flanking Amino Acid:

FYIPDGSFTSVWFYFGVVGS

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

67.9

37.4

Major BPS

64.5

0.36

1.2

72.7

34.4

Major PPT

49.8

-0

45.1

29.5

Minor 5ss

24.1

-3

3.3

42.8

Minor BPS

43.1

-0.5

57.29

Associated Gene:

Gene:

SERINC2

Ensembl Gene ID:

ENSAPLG00000010195

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042290

1754530 - 1757488

2959

ENSAPLT00000030250

1754530 - 1761735

7206

ENSAPLT00000010643

1754417 - 1757488

3072