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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1786593_1788449_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1786593 - 1788449
Intron Length:
1857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTCAC
U12 Branch Point Sequence:
TTTGCTCTCTCT
Flanking Amino Acid:
ETTADDRHVKSVVTLDGGKL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
46.8
-0.2
1.4
48.8
46.3
Major PPT
81.4
0.71
0.7
76.7
25.3
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
37.1
-0.9
3.6
71.91
45.3

Associated Gene:

Gene:
FABP3
Ensembl Gene ID:
ENSAPLG00000010145
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010566
1785628 - 1788706
3079