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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1788552_1788652_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1788552 - 1788652
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CGGTGCTCACCT
Flanking Amino Acid:
RELKDGKLILTLTMGSVVST
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
77.9
0.63
0.8
69.5
36.8
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
44.3
-0.3
2.2
60.43
48.7

Associated Gene:

Gene:
FABP3
Ensembl Gene ID:
ENSAPLG00000010145
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010566
1785628 - 1788706
3079