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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_178992_180708_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178992 - 180708
Intron Length:
1717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TTCTCTCTTACA
Flanking Amino Acid:
PPLSLQSEEQGASRVYRTTS
Intron Amino Acid Position:
1104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
55
0.15
2
71.9
40.1

Associated Gene:

Gene:
LUZP1
Ensembl Gene ID:
ENSAPLG00000019114
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026237
177271 - 190041
12771