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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1803535_1804584_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1803535 - 1804584
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
AAATTCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CCCTCCCAAATT
Flanking Amino Acid:
FIKIPGCRKQGLVHKTHMSS
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
63.6
0.31
1
54.9
44.7
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
47.9
-0
2
63.6
47.2

Associated Gene:

Gene:
ZCCHC17
Ensembl Gene ID:
ENSAPLG00000021781
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047229
1790054 - 1806046
15993