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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1804643_1805347_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1804643 - 1805347
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGGGC
5'SS Class:
major
3'SS Sequence:
CTTTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCCTTTAAAT
Flanking Amino Acid:
PELYAVLQGEVASVTEYGAF
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.3
66.9
38.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.9
0.79
0.7
80.1
25.5
Minor 5ss
25
-2.9
3.3
33
42.2
Minor BPS
77.7
0.95
1.3
90.96
31.7

Associated Gene:

Gene:
ZCCHC17
Ensembl Gene ID:
ENSAPLG00000021781
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047229
1790054 - 1806046
15993