Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1811748_1812783_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1811748 - 1812783

Intron Length:

1036

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCC|GTGAGTACG

5'SS Class:

major

3'SS Sequence:

CCTTTTCTCGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCAAC

U12 Branch Point Sequence:

CCAGTTCCAACC

Flanking Amino Acid:

LASAGFDRLILLWNVYGDCD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.3

0.36

1.3

62.7

43.4

Major BPS

61.9

0.3

1.2

70.7

33.5

Major PPT

80.2

0.68

0.7

76.6

25.5

Minor 5ss

32.5

-2

2.6

39.5

38.8

Minor BPS

40.5

-0.7

1.8

42.86

38.7

Associated Gene:

Gene:

SNRNP40

Ensembl Gene ID:

ENSAPLG00000009767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010221

1811174 - 1823007

11834

ENSAPLT00000044309

1811174 - 1821228

10055