Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1815313_1816347_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1815313 - 1816347

Intron Length:

1035

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGATGT

5'SS Class:

strong_major

3'SS Sequence:

TGCTGTCTGAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

TCCTTTTGAGCT

Flanking Amino Acid:

ISGGIDNDIKVWDLRQNKLT

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

74.2

37.1

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

57.8

0.18

1.2

59.1

41.1

Minor 5ss

45.8

-0.4

2.9

65.2

Minor BPS

0.08

1.7

67.64

43.8

Associated Gene:

Gene:

SNRNP40

Ensembl Gene ID:

ENSAPLG00000009767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044309

1811174 - 1821228

10055

ENSAPLT00000010221

1811174 - 1823007

11834