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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1821176_1822957_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1821176 - 1822957
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCGT
5'SS Class:
major
3'SS Sequence:
CTCTCTCTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTCCCTTCCT
Flanking Amino Acid:
ELAFHPEEPIILSASSDKRL
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
66.8
44.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80.9
0.7
0.7
76.1
25.9
Minor 5ss
38.1
-1.3
3.1
56
42.1
Minor BPS
41.7
-0.5
3.7
76.91
45.3

Associated Gene:

Gene:
SNRNP40
Ensembl Gene ID:
ENSAPLG00000009767
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010221
1811174 - 1823007
11834