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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1832783_1852958_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1832783 - 1852958
Intron Length:
20176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCGA
5'SS Class:
major
3'SS Sequence:
TGTTCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
TTGTTCTTCCCC
Flanking Amino Acid:
TLVGFCCLQLIAALERQIFD
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
61.6
44.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
80.9
0.7
0.8
73.4
37.1
Minor 5ss
37.4
-1.4
3
44.7
45
Minor BPS
43.5
-0.5
3.6
69.13
43

Associated Gene:

Gene:
NKAIN1
Ensembl Gene ID:
ENSAPLG00000029636
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031851
1832549 - 1860870
28322