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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1854804_1855461_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1854804 - 1855461
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGATAAC
U12 Branch Point Sequence:
TTCTCCCTGCCC
Flanking Amino Acid:
VSSAAQIFLALFGFVYACYV
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
38
Major BPS
50.4
0.01
1.2
53.4
38.7
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
31
-2.2
3.5
43.1
44.2
Minor BPS
43.3
-0.5
3.6
70.52
41.3

Associated Gene:

Gene:
NKAIN1
Ensembl Gene ID:
ENSAPLG00000029636
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031851
1832549 - 1860870
28322