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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1867855_1871517_F

Intron Information:

Intron Rank:
137026
Intron Class:
major
Intron Phase:
Intron Coordinates:
1867855 - 1871517
Intron Length:
3663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
CGCTGCAGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
70.8
0.47
0.9
62.8
39.6
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
45
-0.3
2.1
62.42
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023789
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042771
1867465 - 1872532
5068