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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1928221_1929164_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1928221 - 1929164
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTTCAAACT
Flanking Amino Acid:
VIISSSAAQAAVAAAAASAS
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.2
0.75
0.8
76.9
31.2
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
53.5
0.19
2
78.25
38.3

Associated Gene:

Gene:
PUM1
Ensembl Gene ID:
ENSAPLG00000009351
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009800
1880319 - 1947927
67609