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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1929462_1931233_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1929462 - 1931233
Intron Length:
1772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GTTGTCTTCACT
Flanking Amino Acid:
GSALGGFGTAVANSNTGSGS
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
77.5
0.68
1
79.6
33
Major PPT
78.6
0.64
0.8
69.3
36.9
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
61.4
0.44
1.9
79.89
42.3

Associated Gene:

Gene:
PUM1
Ensembl Gene ID:
ENSAPLG00000009351
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009800
1880319 - 1947927
67609