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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1936793_1937284_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1936793 - 1937284
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATTG
5'SS Class:
major
3'SS Sequence:
CCTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
CCAACCTTATTT
Flanking Amino Acid:
MEFSQDQHGSRFIQLKLERA
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68.5
39.2
Major BPS
70
0.5
1
59.6
38.6
Major PPT
86.3
0.82
0.8
83.9
30.7
Minor 5ss
34.7
-1.7
3.4
46.1
49.1
Minor BPS
53.8
0.2
1.7
65.14
45.6

Associated Gene:

Gene:
PUM1
Ensembl Gene ID:
ENSAPLG00000009351
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009800
1880319 - 1947927
67609