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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1938291_1939695_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1938291 - 1939695
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
CTCCTCCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGTT
U12 Branch Point Sequence:
CTCCTCCTAATA
Flanking Amino Acid:
EFIPPDQQVINEMVRELDGH
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
36.1
-0.8
4.3
65.3
43.7
Major PPT
69.8
0.45
0.8
65.7
28.8
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
50.5
0.01
1.7
60.62
39.9

Associated Gene:

Gene:
PUM1
Ensembl Gene ID:
ENSAPLG00000009351
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009800
1880319 - 1947927
67609