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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_1939834_1941508_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1939834 - 1941508
Intron Length:
1675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAA
U12 Branch Point Sequence:
TCTCCTTGAACG
Flanking Amino Acid:
QFIIDAFKGQVFALSTHPYG
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
62.3
0.31
1.1
54.9
40.8
Major PPT
67.4
0.39
1
62.1
37.7
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
62.2
0.24
1.5
65.65
42.1

Associated Gene:

Gene:
PUM1
Ensembl Gene ID:
ENSAPLG00000009351
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009800
1880319 - 1947927
67609